Open petermr opened 2 years ago
(base) pm286macbook:docanalysis pm286$ python3 demo.py Collecting en-core-web-sm==3.0.0 Downloading https://github.com/explosion/spacy-models/releases/download/en_core_web_sm-3.0.0/en_core_web_sm-3.0.0-py3-none-any.whl (13.7 MB) |████████████████████████████████| 13.7 MB 2.1 MB/s Requirement already satisfied: spacy<3.1.0,>=3.0.0 in /opt/anaconda3/lib/python3.8/site-packages (from en-core-web-sm==3.0.0) (3.0.6) Requirement already satisfied: catalogue<2.1.0,>=2.0.3 in /opt/anaconda3/lib/python3.8/site-packages (from spacy<3.1.0,>=3.0.0->en-core-web-sm==3.0.0) (2.0.4) Requirement already satisfied: srsly<3.0.0,>=2.4.1 in /opt/anaconda3/lib/python3.8/site-packages (from spacy<3.1.0,>=3.0.0->en-core-web-sm==3.0.0) (2.4.1) Requirement already satisfied: thinc<8.1.0,>=8.0.3 in /opt/anaconda3/lib/python3.8/site-packages (from spacy<3.1.0,>=3.0.0->en-core-web-sm==3.0.0) (8.0.7) Requirement already satisfied: pydantic<1.8.0,>=1.7.1 in /opt/anaconda3/lib/python3.8/site-packages (from spacy<3.1.0,>=3.0.0->en-core-web-sm==3.0.0) (1.7.4) Requirement already satisfied: typer<0.4.0,>=0.3.0 in /opt/anaconda3/lib/python3.8/site-packages (from spacy<3.1.0,>=3.0.0->en-core-web-sm==3.0.0) (0.3.2) Requirement already satisfied: requests<3.0.0,>=2.13.0 in /opt/anaconda3/lib/python3.8/site-packages (from spacy<3.1.0,>=3.0.0->en-core-web-sm==3.0.0) (2.20.0) Requirement already satisfied: murmurhash<1.1.0,>=0.28.0 in /opt/anaconda3/lib/python3.8/site-packages (from spacy<3.1.0,>=3.0.0->en-core-web-sm==3.0.0) (1.0.5) Requirement already satisfied: spacy-legacy<3.1.0,>=3.0.4 in /opt/anaconda3/lib/python3.8/site-packages (from spacy<3.1.0,>=3.0.0->en-core-web-sm==3.0.0) (3.0.7) Requirement already satisfied: preshed<3.1.0,>=3.0.2 in /opt/anaconda3/lib/python3.8/site-packages (from spacy<3.1.0,>=3.0.0->en-core-web-sm==3.0.0) (3.0.5) Requirement already satisfied: wasabi<1.1.0,>=0.8.1 in /opt/anaconda3/lib/python3.8/site-packages (from spacy<3.1.0,>=3.0.0->en-core-web-sm==3.0.0) (0.8.2) Requirement already satisfied: setuptools in /opt/anaconda3/lib/python3.8/site-packages (from spacy<3.1.0,>=3.0.0->en-core-web-sm==3.0.0) (57.4.0) Requirement already satisfied: cymem<2.1.0,>=2.0.2 in /opt/anaconda3/lib/python3.8/site-packages (from spacy<3.1.0,>=3.0.0->en-core-web-sm==3.0.0) (2.0.5) Requirement already satisfied: numpy>=1.15.0 in /opt/anaconda3/lib/python3.8/site-packages (from spacy<3.1.0,>=3.0.0->en-core-web-sm==3.0.0) (1.19.1) Requirement already satisfied: packaging>=20.0 in /opt/anaconda3/lib/python3.8/site-packages (from spacy<3.1.0,>=3.0.0->en-core-web-sm==3.0.0) (20.4) Requirement already satisfied: jinja2 in /opt/anaconda3/lib/python3.8/site-packages (from spacy<3.1.0,>=3.0.0->en-core-web-sm==3.0.0) (2.11.2) Requirement already satisfied: tqdm<5.0.0,>=4.38.0 in /opt/anaconda3/lib/python3.8/site-packages (from spacy<3.1.0,>=3.0.0->en-core-web-sm==3.0.0) (4.49.0) Requirement already satisfied: blis<0.8.0,>=0.4.0 in /opt/anaconda3/lib/python3.8/site-packages (from spacy<3.1.0,>=3.0.0->en-core-web-sm==3.0.0) (0.7.4) Requirement already satisfied: pathy>=0.3.5 in /opt/anaconda3/lib/python3.8/site-packages (from spacy<3.1.0,>=3.0.0->en-core-web-sm==3.0.0) (0.6.0) Requirement already satisfied: six in /opt/anaconda3/lib/python3.8/site-packages (from packaging>=20.0->spacy<3.1.0,>=3.0.0->en-core-web-sm==3.0.0) (1.15.0) Requirement already satisfied: pyparsing>=2.0.2 in /opt/anaconda3/lib/python3.8/site-packages (from packaging>=20.0->spacy<3.1.0,>=3.0.0->en-core-web-sm==3.0.0) (2.4.7) Requirement already satisfied: smart-open<6.0.0,>=5.0.0 in /opt/anaconda3/lib/python3.8/site-packages (from pathy>=0.3.5->spacy<3.1.0,>=3.0.0->en-core-web-sm==3.0.0) (5.1.0) Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /opt/anaconda3/lib/python3.8/site-packages (from requests<3.0.0,>=2.13.0->spacy<3.1.0,>=3.0.0->en-core-web-sm==3.0.0) (3.0.4) Requirement already satisfied: urllib3<1.25,>=1.21.1 in /opt/anaconda3/lib/python3.8/site-packages (from requests<3.0.0,>=2.13.0->spacy<3.1.0,>=3.0.0->en-core-web-sm==3.0.0) (1.24.3) Requirement already satisfied: idna<2.8,>=2.5 in /opt/anaconda3/lib/python3.8/site-packages (from requests<3.0.0,>=2.13.0->spacy<3.1.0,>=3.0.0->en-core-web-sm==3.0.0) (2.7) Requirement already satisfied: certifi>=2017.4.17 in /opt/anaconda3/lib/python3.8/site-packages (from requests<3.0.0,>=2.13.0->spacy<3.1.0,>=3.0.0->en-core-web-sm==3.0.0) (2020.6.20) Requirement already satisfied: click<7.2.0,>=7.1.1 in /opt/anaconda3/lib/python3.8/site-packages (from typer<0.4.0,>=0.3.0->spacy<3.1.0,>=3.0.0->en-core-web-sm==3.0.0) (7.1.2) Requirement already satisfied: MarkupSafe>=0.23 in /opt/anaconda3/lib/python3.8/site-packages (from jinja2->spacy<3.1.0,>=3.0.0->en-core-web-sm==3.0.0) (1.1.1) Installing collected packages: en-core-web-sm Successfully installed en-core-web-sm-3.0.0 ✔ Download and installation successful You can now load the package via spacy.load('en_core_web_sm') 0it [00:00, ?it/s] INFO:root:Found 0 sentences Traceback (most recent call last): File "demo.py", line 4, in <module> dict_for_entities = ethic_statement_creator.extract_entities_from_papers( File "/Users/pm286/workspace/docanalysis/docanalysis/extract_entities.py", line 68, in extract_entities_from_papers self.convert_dict_to_csv( File "/Users/pm286/workspace/docanalysis/docanalysis/extract_entities.py", line 179, in convert_dict_to_csv df.to_csv(path, encoding='utf-8', line_terminator='\r\n') File "/opt/anaconda3/lib/python3.8/site-packages/pandas/core/generic.py", line 3384, in to_csv return DataFrameRenderer(formatter).to_csv( File "/opt/anaconda3/lib/python3.8/site-packages/pandas/io/formats/format.py", line 1083, in to_csv csv_formatter.save() File "/opt/anaconda3/lib/python3.8/site-packages/pandas/io/formats/csvs.py", line 228, in save with get_handle( File "/opt/anaconda3/lib/python3.8/site-packages/pandas/io/common.py", line 639, in get_handle handle = open( FileNotFoundError: [Errno 2] No such file or directory: '/Users/pm286/workspace/docanalysis/corpus/e_cancer_clinical_trial_50/entities.csv' (base) pm286macbook:docanalysis pm286$