Copying 'ContentMine folder' onto desktop for 'AMI' installation in Windows 10

[Priya-Jk-15]

I am trying to install AMI in Windows 10 from https://github.com/petermr/tigr2ess/blob/master/installation/windows/INSTALLATION.md I have installed Java and tested its installation

C:\>java -version
java version "1.8.0_251"
Java(TM) SE Runtime Environment (build 1.8.0_251-b08)
Java HotSpot(TM) Client VM (build 25.251-b08, mixed mode, sharing)

I have also set path variable and checked as given in instructions.

Now, I am trying to copy the ContentMine folder onto the desktop of my system. But I am unable to understand how to do it. Kindly help me on how to copy the ContentMine folder onto my desktop.

[petermr]

Thanks, You have reported this well. The instructions for TIGR2ESS involved every delegate getting a pen drive and copying the software. This is not relevant here. I don't use Windows so we'll ask the others on Slack. If anyone has done this, then we can copy. If not, we'll have to work out where to put it.

[Pruthivrajan]

I am trying to intsall AMI in windows 10. I have installed java successfully. C:\Users\admin>java -version java version "1.8.0_251" Java(TM) SE Runtime Environment (build 1.8.0_251-b08) Java HotSpot(TM) Client VM (build 25.251-b08, mixed mode) Facing issue in installing AMI. Here i have attached the screenshot

[petermr]

Installation instructions: To install ami you need:

• make sure you can run git. This is best on the commandline, although some people use a client.
• decide where to put ami. Suggest you create a Projects directory/folder for your data and have a separateSoftware directory (you may also have a place where software is installed. (Don't mix data and programs).
• cd <software>
• git clone https://github.com/petermr/ami-jars2.git

This will download ami-jars2 onto your machine. There's quite a lot so we need to find a better place . Maybe we should create one repo per release? Or maybe use a filesharer?

then set the PATH/%path% to point to include

/some/where/software/ami-jars2/ami20200406/bin/

or

C:\Some\where\Software\ami-jars2\ami20200406\bin\

In either case you should be able to type

ami --help

[petermr]

This isn't an Issue. An Issue consists of something that asks a specific question. You have posted your %path%. Now your question might be:

• ami is not on my path. I type ami and nothing happens. [Include copy of log].
• OR I type ami and get a Stack dump (attach it)
• OR ... You have to say what you are trying to do. Then we can help. If you can't find instructions, the Issue is "cannot find instructions for ami search. I have looked on openVirus/ami and it suggests doing X but... [give log of what you trie]

BTW please don't use screen shots, Cut and paste into code boxes.

P.

On Sat, Jun 6, 2020 at 12:06 PM Pruthivrajan notifications@github.com wrote:

I am trying to intsall AMI in windows 10. I have installed java successfully. C:\Users\admin>java -version java version "1.8.0_251" Java(TM) SE Runtime Environment (build 1.8.0_251-b08) Java HotSpot(TM) Client VM (build 25.251-b08, mixed mode) Facing issue in installing AMI. Here i have attached the screenshot [image: Screenshot (23)] https://user-images.githubusercontent.com/66299927/83942712-d33c2280-a813-11ea-8c91-b0f233d4c908.png

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/petermr/openVirus/issues/60#issuecomment-640040227, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAFTCS43B2XBFYNGXMNTRILRVIPMXANCNFSM4NVZPGRA .

-- Peter Murray-Rust Founder ContentMine.org and Reader Emeritus in Molecular Informatics Dept. Of Chemistry, University of Cambridge, CB2 1EW, UK

[Priya-Jk-15]

The ContentMine folder can be copied/cloned into the desktop of the system using git clone. The AMI installation referred above [https://github.com/petermr/tigr2ess/blob/master/installation/windows/INSTALLATION.md] was an old version.

For installation of AMI refer https://github.com/petermr/openVirus/wiki/INSTALLING-ami3