"Test run of ami-search-new for the new release of ami-jars - ami20190219."

[ambarishK]

Status of test run of ami-search-new for the ami-jars - ami20190219 is successful.

It finds all cooccurrences among specified search terms and finds bibliographic information into entries.DataTables.html file.

Run time log.

ambarish123@ubuntu:~$ ami-search-new -p ricenew/ --dictionary country gene drugs 
Generic values (AMISearchTool)
================================
basename            null
cproject            /home/ambarish123/ricenew
ctree               
cTreeList           [ricenew/PMC6331594, ricenew/PMC6337123, ricenew/PMC6339371, ricenew/PMC6342930, ricenew/PMC6343365, ricenew/PMC6343895, ricenew/PMC6345848, ricenew/PMC6351596, ricenew/PMC6352273, ricenew/PMC6357162]
dryrun              false
excludeBase         null
excludeTrees        null
file types          []
forceMake           false
includeBase         null
includeTrees        null
log4j               
logfile             null
verbose             0

Specific values (AMISearchTool)
================================
dictionaryList       [country, gene, drugs]
dictionaryTop        null
dictionarySuffix     [xml]
ignorePlugins        []

cProject: ricenew
cannot find dictionary: country
cannot find dictionary: drugs
SEARCH running legacy processors
SEARCH running JSON bibliography

running: word; word([frequencies])[{xpath:@count>20}, {w.stopwords:pmcstop.txt stopwords.txt}]...
running: search; search([country])[]...
running: gene; gene([human])[]0    [main] DEBUG org.contentmine.ami.dictionary.gene.HGNCDictionary  - is /org/contentmine/ami/plugins/gene/hgnc/hgnc.xml
...
running: search; search([drugs])[]...
create data tables

There persists messages related not finding built-in dictionaries.

cannot find dictionary: country
cannot find dictionary: drugs
SEARCH running legacy processors
SEARCH running JSON bibliography

Screenshot of fetched bibliographic information.