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petersaj / AP_histology

Histology processing
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4-shank probe track #10

Closed xcccc402 closed 2 years ago

xcccc402 commented 2 years ago

Hi. I am wondering what would would you sugges when drawing where probe is. Should I draw a line in the middle of dii track? Also, is there any update for 4-shank probe track that I might miss.

petersaj commented 2 years ago

I usually draw the line whenever I see any (strong) DiI on a slice, and at the end it estimates the probe trajectory as the line of best fit through all the points you drew.

I haven't added anything special for 4-shanks - is there some feature that would make it easier? I might think treating them as 4 separate trajectories would be the most straightforward