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petersaj / AP_histology

Histology processing
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AP_loadStructureTree #23

Closed imontiel92 closed 1 year ago

imontiel92 commented 1 year ago

Hello Peter, I hope you are doing well. I cannot use the pipeline for processing histology because this error message appears (in the first step ): st = AP_loadStructureTree([allen_atlas_path filesep 'structure_tree_safe_2017.csv']); Unrecognized function or variable 'AP_loadStructureTree'.

How can I resolve it? Best, Ivan

petersaj commented 1 year ago

Hi Ivan - this function is included in the top level of the repository here, it's probably one of two things:

1) did you clone the whole repository? 2) did you add the cloned repository to your matlab path?

imontiel92 commented 1 year ago

Thank you. The problem was I didn't cloned the whole repository. Sorry for the late reply.