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petersaj / AP_histology

Histology processing
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Error displaying Neuropixels trajectory #31

Closed NJamann closed 10 months ago

NJamann commented 10 months ago

Hi Andy,

I get the following error when doing the Neuropixels alignment step after closing the alignment window:

**Error using yline (line 29) Passing multiple values to ConstantLine is not supported.

Error in ap_histology.annotate_neuropixels>plot_probe (line 246) yline(unique(trajectory_areas_boundaries(:)),'color','k','linewidth',1);

Error in ap_histology.annotate_neuropixels>close_gui (line 390) plot_probe(gui_data,probe_ccf);

Error in iptaddcallback/callbackProcessor (line 149) fun(varargin{:});

Error while evaluating DestroyedObject CloseRequestFcn.**

I don't know if this is relevant, but I just updated the repository from an old AP-histology version that still had the pipeline without the GUI. However, I repeated all the steps with the new version to make sure its not a compatibility issue.

Best, Nora

petersaj commented 10 months ago

Hi Nora - that looks like a matlab version issue, that particular feature was added in R2021a.

Is there a chance you could update your matlab to a newer version? I could make this one function call work for old versions, but then you might run into other snags.

NJamann commented 10 months ago

Hi Andy, ah thanks yes I can also run it on a newer version!