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petersenpeter / CellExplorer

CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cells acquired using extracellular electrodes.
https://cellexplorer.org/
BSD 3-Clause "New" or "Revised" License
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conflict between Kilosort3 and CellExplorer #56

Closed DaniMagyar closed 2 years ago

DaniMagyar commented 2 years ago

Hi,

Unfortunately Kilosort GUI does not work when CellExplorer is added to Matlab path. When I try to run Kilosort3 in Matlab, I get the following error:

>> kilosort
Error using uiextras.Panel
Cannot define property 'Enable' in class 'uiextras.Panel' because the
property has already been defined in the superclass
'matlab.ui.container.Panel'.

Error in ksGUI/build (line 112)
            obj.H.logPanel = uiextras.Panel(...

Error in ksGUI (line 47)
            obj.build(parent);

Error in kilosort (line 18)
h = ksGUI(f);
>> which uiextras.Panel
C:\Users\dmagyar\Documents\Matlab_toolboxes_DM\CellExplorer\toolboxes\GUI Layout Toolbox 2.3.4\layout\+uiextras\Panel.m  % uiextras.Panel constructor

I have to remove CellExplorer from the path every time I use Kilosort3. Do you have any suggestions how to solve this problem?

Thank you, Daniel

petersenpeter commented 2 years ago

Hi Daniel

I believe it is because we use different versions of the same GUI toolbox (GUI Layout Toolbox).

https://se.mathworks.com/matlabcentral/fileexchange/47982-gui-layout-toolbox

The GUI Layout Toolbox version 2.3.4 is included with CellExplorer, but Kilosort might use a different version? Could you check which version you have installed with KiloSort?

petersenpeter commented 2 years ago

OK, I will update CellExplorer to use the same version 2.3.5 (the most recent version) of the toolbox then. This should solve the issue. Hopefully by tomorrow.

DaniMagyar commented 2 years ago

I have tried different versions in the meantime. It seems like Kilosort3 GUI does not work with GUI Layout Toolbox v2.3.4. Thank you for your help.

petersenpeter commented 2 years ago

Hi Daniel, I updated the CellExplorer repo where I removed GUI Layout Toolbox v2.3.4 and included GUI Layout Toolbox v2.3.5. You will have to update your Matlab set path. Let me know if this fixes your issues.

DaniMagyar commented 2 years ago

Hi Peter, the update solved the problem, both Kilosort and CellExplorer work perfectly. Thanks!

petersenpeter commented 2 years ago

Great. I will close the issue but feel free to open it if you experience further issues.