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petitmingchang / TO-GCN

Pipeline of time-ordered gene coexpression network (TO-GCN) construction from three-dimensional (gene expression, condition, and time) data
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How to visualize in TO-GCN in cytoscape #13

Closed nikhilshinde0909 closed 1 year ago

nikhilshinde0909 commented 1 year ago

Sir, I have following output files

  1. C10C2+.csv
  2. TF_levels.csv I want to visualize time ordered gene co-expression in cytoscape How can I ?
petitmingchang commented 1 year ago

@nikhilshinde0909

First, you need to import the C10C2+.csv to the Cytoscape by "File > import > Network from File". You will get a network now.

Second, you need to import the TF_levels.csv to the Cytoscape by "File > import > Table from File". and choose import Data as "Node Table Columns".

Third, change the layout by "Layout > Group Attributes Layout > assigned level". Now, you will get a network arrange by the time order levels.