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petitmingchang / TO-GCN

Pipeline of time-ordered gene coexpression network (TO-GCN) construction from three-dimensional (gene expression, condition, and time) data
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Cutoff Segmentation fault (core dumped) #19

Open wuxiaopei0509 opened 10 months ago

wuxiaopei0509 commented 10 months ago

Thank you for developing such an great tools for analyzing comparative transcripotomic analysis . When I used the Cutoff function, an error 'Segmentation fault (core dumped)' occured and I run under Linux. I have also decreased the TF number to be 1854 and all gene number to be 23429. Could you give some suggestions about this? Thanks~

wuxiaopei0509 commented 10 months ago

[Uploading TG_clone_allgenes_FPKMaverage_filter.txt…]()

wuxiaopei0509 commented 10 months ago

The problems issued above have been addressed. Now I have a question, I want to construct C1+C20 and C10+C2+ TO-GCN, respectively. How should I set the Cutoff_pos_C1 Cutoff_pos_C2 cutoff in the three step? Thanks a lot

hzTan013 commented 7 months ago

Thank you for developing such an great tools for analyzing comparative transcripotomic analysis . When I used the Cutoff function, an error 'Segmentation fault (core dumped)' occured and I run under Linux. I have also decreased the TF number to be 1854 and all gene number to be 23429. Could you give some suggestions about this? Thanks~

I have the same problem, may I ask how you solve it? Thank you

wuxiaopei0509 commented 7 months ago

May be the gene id is too long and you can change it. Good luck to you~

At 2024-03-18 19:52:09, "hzTan013" @.***> wrote:

Thank you for developing such an great tools for analyzing comparative transcripotomic analysis . When I used the Cutoff function, an error 'Segmentation fault (core dumped)' occured and I run under Linux. I have also decreased the TF number to be 1854 and all gene number to be 23429. Could you give some suggestions about this? Thanks~

I have the same problem, may I ask how you solve it? Thank you

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you authored the thread.Message ID: @.***>

hzTan013 commented 7 months ago

May be the gene id is too long and you can change it. Good luck to you~ At 2024-03-18 19:52:09, "hzTan013" @.> wrote: Thank you for developing such an great tools for analyzing comparative transcripotomic analysis . When I used the Cutoff function, an error 'Segmentation fault (core dumped)' occured and I run under Linux. I have also decreased the TF number to be 1854 and all gene number to be 23429. Could you give some suggestions about this? Thanks~ I have the same problem, may I ask how you solve it? Thank you — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you authored the thread.Message ID: @.>

Thanks for your reply, this may be caused by too many genes. The previous total all gene number was 38,535. By more stringent filtering, 30,142 of all gene number is feasible