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petitmingchang / TO-GCN_STAR-Protocol

TO-GCN tools for STAR-Protocol
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visualize TO-GCN？ #3

Open yang1995yang opened 1 month ago

yang1995yang commented 1 month ago

I would like to ask, when doing TO-GCN, how can I get the Gene list in each level.csv to solve the PCC for the same level TF and non-TF, so as to get the relationship network of TF VS NON-TF? How can I calculate it? I'd appreciate it if you could answer it

petitmingchang commented 1 month ago

@yang1995yang

If you want to get relationships between all genes, you can simply merge TF_gene_matrix.tsv and Non-TF_gene_matrix.tsv to a new file (e.g. all_gene_matrix.txv) then run the TO-GCN with the merged file.

petitmingchang