A clear and concise description of what the bug is. Please explain:
There is a failure in the CI while installing the bcolz pip package
It's dismissed with this warning:
Dismissed failure installing some optional package. Resuming tests...
Expected behavior
A clear and concise description of intended behavior. Please explain:
Discover:
If it's a problem.
When it started happening.
If it's worthwhile to fix it.
Scenario for reprodution
Reproducible test case
Please provide a minimal, reproducible code sample, a copy-pastable example if possible:
Collecting numpy>=1.7 (from bcolz->-r requirements-optional.txt (line 14))
Using cached numpy-1.21.6-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (15.7 MB)
Building wheels for collected packages: bcolz
Building wheel for bcolz (setup.py): started
Building wheel for bcolz (setup.py): finished with status 'error'
error: subprocess-exited-with-error
× python setup.py bdist_wheel did not run successfully.
│ exit code: 1
╰─> [89 lines of output]
SSE2 detected
AVX2 detected
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.7
creating build/lib.linux-x86_64-3.7/bcolz
copying bcolz/chunked_eval.py -> build/lib.linux-x86_64-3.7/bcolz
copying bcolz/py2help.py -> build/lib.linux-x86_64-3.7/bcolz
copying bcolz/ctable.py -> build/lib.linux-x86_64-3.7/bcolz
copying bcolz/toplevel.py -> build/lib.linux-x86_64-3.7/bcolz
copying bcolz/arrayprint.py -> build/lib.linux-x86_64-3.7/bcolz
copying bcolz/attrs.py -> build/lib.linux-x86_64-3.7/bcolz
copying bcolz/version.py -> build/lib.linux-x86_64-3.7/bcolz
copying bcolz/utils.py -> build/lib.linux-x86_64-3.7/bcolz
copying bcolz/defaults.py -> build/lib.linux-x86_64-3.7/bcolz
copying bcolz/py2help_tests.py -> build/lib.linux-x86_64-3.7/bcolz
copying bcolz/__init__.py -> build/lib.linux-x86_64-3.7/bcolz
creating build/lib.linux-x86_64-3.7/bcolz/tests
copying bcolz/tests/common.py -> build/lib.linux-x86_64-3.7/bcolz/tests
copying bcolz/tests/test_queries.py -> build/lib.linux-x86_64-3.7/bcolz/tests
copying bcolz/tests/all.py -> build/lib.linux-x86_64-3.7/bcolz/tests
copying bcolz/tests/test_carray_objects.py -> build/lib.linux-x86_64-3.7/bcolz/tests
copying bcolz/tests/test_carray.py -> build/lib.linux-x86_64-3.7/bcolz/tests
copying bcolz/tests/test_attrs.py -> build/lib.linux-x86_64-3.7/bcolz/tests
copying bcolz/tests/test_ndcarray.py -> build/lib.linux-x86_64-3.7/bcolz/tests
copying bcolz/tests/test_ctable.py -> build/lib.linux-x86_64-3.7/bcolz/tests
copying bcolz/tests/__init__.py -> build/lib.linux-x86_64-3.7/bcolz/tests
copying bcolz/carray_ext.pxd -> build/lib.linux-x86_64-3.7/bcolz
running build_ext
Compiling bcolz/carray_ext.pyx because it changed.
[1/1] Cythonizing bcolz/carray_ext.pyx
/tmp/pip-install-e6qfw5hr/bcolz_9ba2781eef6f491cae7bfb67fa2e4f0e/.eggs/Cython-3.0.0-py3.7-linux-x86_64.egg/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-install-e6qfw5hr/bcolz_9ba2781eef6f491cae7bfb67fa2e4f0e/bcolz/carray_ext.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
Error compiling Cython file:
------------------------------------------------------------
...
# Create the final container and fill it
out = carray([], dtype=newdtype, cparams=self.cparams,
expectedlen=newlen,
rootdir=rootdir, mode='w')
if newlen < ilen:
rsize = isize / newlen
^
------------------------------------------------------------
bcolz/carray_ext.pyx:1685:26: Cannot assign type 'double' to 'npy_intp'
Traceback (most recent call last):
File "<string>", line 36, in <module>
File "<pip-setuptools-caller>", line 34, in <module>
File "/tmp/pip-install-e6qfw5hr/bcolz_9ba2781eef6f491cae7bfb67fa2e4f0e/setup.py", line 234, in <module>
cmdclass=LazyCommandClass(),
File "/opt/hostedtoolcache/Python/3.7.17/x64/lib/python3.7/site-packages/setuptools/__init__.py", line 144, in setup
return distutils.core.setup(**attrs)
File "/opt/hostedtoolcache/Python/3.7.17/x64/lib/python3.7/distutils/core.py", line 148, in setup
dist.run_commands()
File "/opt/hostedtoolcache/Python/3.7.17/x64/lib/python3.7/distutils/dist.py", line 966, in run_commands
self.run_command(cmd)
File "/opt/hostedtoolcache/Python/3.7.17/x64/lib/python3.7/distutils/dist.py", line 985, in run_command
cmd_obj.run()
File "/opt/hostedtoolcache/Python/3.7.17/x64/lib/python3.7/site-packages/wheel/bdist_wheel.py", line 349, in run
self.run_command("build")
File "/opt/hostedtoolcache/Python/3.7.17/x64/lib/python3.7/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/opt/hostedtoolcache/Python/3.7.17/x64/lib/python3.7/distutils/dist.py", line 985, in run_command
cmd_obj.run()
File "/opt/hostedtoolcache/Python/3.7.17/x64/lib/python3.7/distutils/command/build.py", line 135, in run
self.run_command(cmd_name)
File "/opt/hostedtoolcache/Python/3.7.17/x64/lib/python3.7/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/opt/hostedtoolcache/Python/3.7.17/x64/lib/python3.7/distutils/dist.py", line 985, in run_command
cmd_obj.run()
File "/opt/hostedtoolcache/Python/3.7.17/x64/lib/python3.7/distutils/command/build_ext.py", line 340, in run
self.build_extensions()
File "/tmp/pip-install-e6qfw5hr/bcolz_9ba2781eef6f491cae7bfb67fa2e4f0e/setup.py", line 77, in build_extensions
cython_build_ext.build_extensions(self)
File "/opt/hostedtoolcache/Python/3.7.17/x64/lib/python3.7/distutils/command/build_ext.py", line 449, in build_extensions
self._build_extensions_serial()
File "/opt/hostedtoolcache/Python/3.7.17/x64/lib/python3.7/distutils/command/build_ext.py", line 474, in _build_extensions_serial
self.build_extension(ext)
File "/tmp/pip-install-e6qfw5hr/bcolz_9ba2781eef6f491cae7bfb67fa2e4f0e/.eggs/Cython-3.0.0-py3.7-linux-x86_64.egg/Cython/Distutils/build_ext.py", line 123, in build_extension
ext,force=self.force, quiet=self.verbose == 0, **options
File "/tmp/pip-install-e6qfw5hr/bcolz_9ba2781eef6f491cae7bfb67fa2e4f0e/.eggs/Cython-3.0.0-py3.7-linux-x86_64.egg/Cython/Build/Dependencies.py", line 1134, in cythonize
cythonize_one(*args)
File "/tmp/pip-install-e6qfw5hr/bcolz_9ba2781eef6f491cae7bfb67fa2e4f0e/.eggs/Cython-3.0.0-py3.7-linux-x86_64.egg/Cython/Build/Dependencies.py", line 1301, in cythonize_one
raise CompileError(None, pyx_file)
Cython.Compiler.Errors.CompileError: bcolz/carray_ext.pyx
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for bcolz
Running setup.py clean for bcolz
Failed to build bcolz
ERROR: Could not build wheels for bcolz, which is required to install pyproject.toml-based projects
Version and installation information
Please provide the following:
Value of petl.__version__: 1.7.12
Version information for any third-party package dependencies that are relevant:
numpy>=1.7 ??
bcolz-1.2.1
Version of Python interpreter: 3.7 and possibly later
Problem description
What's happenning
A clear and concise description of what the bug is. Please explain:
Expected behavior
A clear and concise description of intended behavior. Please explain:
Scenario for reprodution
Reproducible test case
Please provide a minimal, reproducible code sample, a copy-pastable example if possible:
Version and installation information
Please provide the following:
petl.__version__:1.7.12numpy>=1.7??bcolz-1.2.13.7and possibly laterubuntu-latestrequirements-optional.txt(line 14)