write script to get cheap estimates of initial values and scaling for parameters

petrelharp / context

Context-dependent mutation rate inference machinery.

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write script to get cheap estimates of initial values and scaling for parameters #31

Open petrelharp opened 9 years ago

petrelharp commented 9 years ago

Since bad scaling, or initial values, can prevent convergence, these have to be specified in the config file now. Take code commented out of fit-model.R, and add some code to explore the likelihood surface (around the truth in simulated data?) to get cheap estimates of these things.