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petrelharp / context

Context-dependent mutation rate inference machinery.
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remove (or, fixup?) `nestly/`? #40

Open petrelharp opened 2 years ago

petrelharp commented 2 years ago

The build_and_test.sh script does some scons + nestly things that fail:

$ cd nestly && scons simple && scons -j 6 seed
bash: cd: nestly: No such file or directory
peter@skua:~/projects/context/nestly$ scons simple
scons: Reading SConscript files ...
TypeError: expected str, bytes or os.PathLike object, not dict:
  File "/home/peter/projects/context/nestly/SConstruct", line 205:
    nest = cl_targets[target_str]()      # Initialize the nest using one of the functions above
  File "/home/peter/projects/context/nestly/SConstruct", line 67:
    nest.add('model', model_configs,
  File "/home/peter/.local/lib/python3.9/site-packages/nestly/scons.py", line 94:
    return self.nest.add(name, nestable, **kw)
  File "/home/peter/.local/lib/python3.9/site-packages/nestly/core.py", line 194:
    new_outdir = os.path.join(outdir, label_func(to_label))
  File "/usr/lib/python3.9/posixpath.py", line 142:
    p = os.fspath(p)

We should remove this, I assume, unless there is a very easy fix?