genome size - Githubissues

petrelharp / nebria

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genome size #10

Closed petrelharp closed 2 years ago

petrelharp commented 2 years ago

Yi-Ming says that:

genome size 147e6 bp
between 20 and 50 chromosomes
so chromosomes might be around (150/20) Mbp = 7.5e6
recombination rate is 2.48e-8

So, a 1M chromosome is 40 Mbp.

Proposal: simulate with L = 40e6 and recombination rate as above.