petrelharp / progen-2023

tskit poster for probgen 2023
0 stars 4 forks source link

workflow image #10

Open petrelharp opened 1 year ago

petrelharp commented 1 year ago

here's a draft of the "workflow" diagram - I haven't put in things for the output yet, though? (or figured out a better label than "insights" for that one arrow =) This is the inkscape SVG; feel free to edit.

workflow ink

petrelharp commented 1 year ago

Hm, those lines actually have arrowheads on the end: github's SVG rendering isn't making those show up: workflow

nspope commented 1 year ago

looks awesome @petrelharp -- I see the arrowheads on both versions. I wonder if rather than the diagonal arrows leading out of "tskit" node, a bulleted list of more specific applications in a slightly smaller font would be a more efficient use of space? Something like,

                                 * visualization
                     ----------  * compression          
(workflow schematic) | ts kit |  * genealogical analysis
                     ----------  * population genetics
                                 * phylogenetics

though I'm sure there are better choices of keywords (in the meeting, it sounded like @hyanwong maybe had some in mind?).

But I also think it looks great as-is.

jeromekelleher commented 1 year ago

This looks great @petrelharp! The only input I'd have is that the "left hand side" sort of implies that this is a closed system, but really these are the just things we (as a group) happen to work on that use tskit.

Would it be possible to add like things like Relate, ARGneedle (which do support tskit, to a degree) on the inference side and maybe fwdpy11, gspace, sleepy on the simulation side? Could just be a (Also, fwdpy11, gspace, sleepy...) just underneath the existing box, e.g.

petrelharp commented 1 year ago

Good points, both! (I was thinking about Relate etc already) I'll work on it.

petrelharp commented 1 year ago

couldn't find an ARGneedle logo, and: Screenshot from 2023-03-03 16-35-25 ... but will add anyhow

petrelharp commented 1 year ago

Current version: workflow ink