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petrelharp / treestats_ms

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Split out Figure 2A (and adjust Relate results) #50

Closed petrelharp closed 4 years ago

petrelharp commented 4 years ago

This closes #48. I may have messed up the flow; will definately need a read-through.

I've also added a new supplementary figure based on a different tree sequence from Leo: our previous assertion that Site/Branch hovered around the mutation rate was worrisome, since he thought the mutation rate should be 1.45e-8; this should clear that up and add some more nuance to that section.

jeromekelleher commented 4 years ago

Looks like we're missing the adding_weights figure here @petrelharp?

petrelharp commented 4 years ago

Whoops - actually put in the figure now. =)

petrelharp commented 4 years ago

the new figures are super clear.

Will merge; thanks!