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petrov-lab / tuba-seq

Analysis pipeline and utilities for TUmor BArcoded DNA Sequencing
https://github.com/petrov-lab/tuba-seq
MIT License
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The input for graphs.py #2

Open mcolic opened 2 years ago

mcolic commented 2 years ago

Hi,

I would like to generate the percentile plot, defined in the graphs.py script. However, I am unsure what the input is, or how to run this script. The inputs for the functions defined in the graphs.py are x, S, Y - and knowing what those represent would be great. I would appreciate if you could clarify this and provide guidance.

Thank you.

cd-mcfarland commented 2 years ago

Hi Medina Colic,

I added a docstring to the percentile_plot function in graphs.py. The inputs you mention (x, S, Y) are definitely variables that I used extensively when writing this package, but I couldn't find them specifically in the function I just documented.

It looks like you're getting deep into the details of this package. Let me know if you want to chat by zoom sometime; it might just be easier to discuss what you need and which code bits are easiest for me to share - the code for TuBa-seq just keeps continually evolving and its hard to stay atop of everything.

Bets, Chris