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pezmaster31 / bamtools

C++ API & command-line toolkit for working with BAM data
MIT License
418 stars 153 forks source link

problem compiling bamtools with CMAKE 3.1.4 on Mac OS 10.13.6 (sierra) #186

Closed wsossin closed 3 years ago

wsossin commented 5 years ago

Sorry, if this seems naive, but I am just getting into bioinformatics.

I downloaded Cmake which now comes as an application. I download bamtools and put it in a folder in applications. I use Cmake to configure (configure again because there are red variables) and generate (in a build folder in the bamtools-master folder). I then (on Monitor) go to the build directory and use make. Below is the error message. What am I doing wrong??

Scanning dependencies of target SharedHeaders [ 0%] Built target SharedHeaders Scanning dependencies of target APIHeaders [ 0%] Built target APIHeaders Scanning dependencies of target AlgorithmsHeaders [ 0%] Built target AlgorithmsHeaders Scanning dependencies of target BamTools [ 1%] Building CXX object api/CMakeFiles/BamTools.dir/BamAlignment.o /Applications/bamtools-master/src/api/BamAlignment.cpp:10:10: fatal error: 'api/BamAlignment.h' file not found

include "api/BamAlignment.h"

1 error generated. make[2]: [api/CMakeFiles/BamTools.dir/BamAlignment.o] Error 1 make[1]: [api/CMakeFiles/BamTools.dir/all] Error 2 make: *** [all] Error 2

SoapZA commented 3 years ago

CMake bug? building on macOS works fine here.