Hello, thanks for the great work on this project! I am using HALPER on a server and had some trouble installing matplotlib. I was more interested in the bed file output than visualizing as a histogram (cool feature!) and found it faster to just circumvent the matplotlib dependency by moving the import into the make_hist function and adding a command line argument that allows you to prevent make_hist from being called.
Histogram creation can be turned off by adding the -noHist flag to your arguments, if -noHist is not passed then the histogram is created by default.
Maybe this would be helpful for others who are limited on what they can install dependency wise.
Hello, thanks for the great work on this project! I am using HALPER on a server and had some trouble installing matplotlib. I was more interested in the bed file output than visualizing as a histogram (cool feature!) and found it faster to just circumvent the matplotlib dependency by moving the import into the
make_histfunction and adding a command line argument that allows you to preventmake_histfrom being called.Histogram creation can be turned off by adding the
-noHistflag to your arguments, if-noHistis not passed then the histogram is created by default.Maybe this would be helpful for others who are limited on what they can install dependency wise.