kellijohnson-NOAA
commented
1 month ago @gertsevv I pulled the data that are available using a script that I placed on the server Assessments\CurrentAssessments\blackspotted_rougheye_2025\data\pacfin But, there are no catches for "UDW1", is this expected or something that should be looked into more? Additionally, the duplicated records should be looked into more and the respective state agencies should be notified. The data are in the previously mentioned folder. I will leave the issue open for you to either close or leave comments if you need anything additional from me.
# Pull data for blackspotted and rougheye from PacFIN
# Author: Kelli F. Johnson
actual_codes <- c("BSPR", "REYE")
vlada_F <- PacFIN.Utilities::PullCatch.PacFIN(
pacfin_species_code = c(actual_codes, "RBR1", "UDW1"),
addnominal = FALSE
)
# The following PACFIN_SPECIES_CODE(s) were found:
# PACFIN_SPECIES_CODE n
# 1 'BSPR' 8992
# 2 'RBR1' 1987
# 3 'REYE' 276108
vlada_T <- PacFIN.Utilities::PullCatch.PacFIN(
pacfin_species_code = c(actual_codes),
addnominal = TRUE
)
# The following nominal species codes were added: BSP1 and REY1
# The following PACFIN_SPECIES_CODE(s) were found:
# PACFIN_SPECIES_CODE n
# 1 'BSP1' 17
# 2 'BSPR' 8992
# 3 'REY1' 98
# 4 'REYE' 276108
# No need to include nominal codes here
vlada_bds <- PacFIN.Utilities::PullBDS.PacFIN(
pacfin_species_code = c(actual_codes)
)
# The following PACFIN_SPECIES_CODE(s) were found:
# PACFIN_SPECIES_CODE n
# 1 'BSPR' 853
# 2 'REYE' 56039
# Warning: The downloaded data contains duplicated entries that will be
# removed prior to returning the data. Please notify the agency that
# provided the following duplicated samples:
# # A tibble: 14 × 4
# # Groups: AGENCY_CODE, SAMPLE_YEAR, SAMPLE_NUMBER [14]
# AGENCY_CODE SAMPLE_YEAR SAMPLE_NUMBER n
# <chr> <int> <chr> <int>
# 1 C 2021 2021220270187 5
# 2 C 2021 2021220270188 3
# 3 C 2021 2021220270192 2
# 4 C 2021 2021220370229 1
# 5 C 2021 2021220370251 3
# 6 C 2021 2021220470353 1
# 7 C 2021 2021220470367 1
# 8 C 2021 2021220470370 6
# 9 C 2022 2022220170081 1
# 10 C 2022 2022220270163 1
# 11 C 2022 2022220370284 3
# 12 C 2022 2022220470297 12
# 13 C 2022 2022220470299 1
# 14 C 2022 2022223160024 1
gertsevv
aliwhitman
Identify the common name(s) or PacFIN species code(s)
BSPR BLACKSPOTTED ROCKFISH REYE ROUGHEYE ROCKFISH RBR1 NOM. ROUGHEYE + BLACKSPOT UDW1 SHORTRAKER+ROUGHEYE
Type of data needed
catch, biological data
Additional information
Catch (landings) to be included in the model as two fleets - trawl and non trawl. Trawl includes bottom and midwater trawl gears, and non trawl would include the rest.
Do you you have clearance to access these data?