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pfmc-assessments / PacFIN.Utilities

R code to manipulate data from the PacFIN database for assessments

http://pfmc-assessments.github.io/PacFIN.Utilities

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Wish list #19

Closed kellijohnson-NOAA closed 2 years ago

kellijohnson-NOAA commented 5 years ago

Tasks to complete eventually. Feel free to add more to the list.

[x] cleanAges
- [x] move code cleanPacFIN
- [x] change cleanAges to run cleanPacFIN but tell users that it is deprecated
[ ] cleanPacFIN
- [ ] #74

iantaylor-NOAA commented 5 years ago

[ ] expand doSexRatio() to report what fraction of the samples were unsexed and modified

iantaylor-NOAA commented 5 years ago

@kellijohnson-NOAA, let me know if I should open separate issues for this stuff. I'm happy to help with the changes during a less-busy time.

[ ] change output of writeComps() better match SS version 3.30 input format:
- [ ] remove ageErr column when writing length comps.
- [ ] rename season to month and put it before fleet
- [ ] consider writing Ntows to a separate file for use in tables as opposed to SS inputs

iantaylor-NOAA commented 5 years ago

[x] a variety of improvements being committed to the ian_suggestions branch. Feel free to cherry pick, merge, rebase, whatever, but I don't want to mess up other people's work, so will just make commits in this branch for now.

kellijohnson-NOAA commented 2 years ago

Duplicated with #8 because it doesn't make sense to enhance the output here in {PacFIN.Utilities} when {nwfscSurvey} already has great output. Closing this issue now that all of the tasks have been farmed out into individual issues.