kellijohnson-NOAA
commented
6 years ago In the following functions:
- [x] VAST_OM
- [x] VAST_OM:
SpatialDeltaGLMM::Geostat_Sim - [x] VAST_EM
- [x] VAST_run:
SpatialDeltaGLMM::PlotIndex_Fn - [x] vast_wc_diag_plot:
SpatialDeltaGLMM::Prepare_Extrapolation_Data_Fn - [x] vast_wc_diag_plot:
SpatialDeltaGLMM::Spatial_Information_Fn - [x] vast_wc_diag_plot:
SpatialDeltaGLMM::MapDetails_Fn - [x] vast_wc_diag_plot:
SpatialDeltaGLMM::PlotAniso_Fn - [x] vast_wc_diag_plot:
SpatialDeltaGLMM::PlotResultsOnMap_Fn - [x] vast_wc_diag_plot:
SpatialDeltaGLMM::PlotIndex_Fn - [x] vast_wc_diag_plot:
SpatialDeltaGLMM::Plot_range_shifts - [x] vast_wc_diag_plot:
SpatialDeltaGLMM::Plot_data_and_knots - [x] vast_wc_diag_plot:
SpatialDeltaGLMM::Check_encounter_prob - [x] vast_wc_diag_plot:
SpatialDeltaGLMM::QQ_Fn - [x] vast_wc_diag_plot:
SpatialDeltaGLMM::plot_residuals
SpatialDeltaGLMM is deprecated and all relevant code was moved to VAST or FishStatsUtils. Many functions in VAST_WestCoast depend on SpatialDeltaGLMM and should be updated to use newer code that will be maintained in the future.