pfmc-assessments nwfscSurvey issues

pfmc-assessments / nwfscSurvey

Tool to pull and process NWFSC West Coast groundfish survey data for use in PFMC groundfish stock assessments

http://pfmc-assessments.github.io/nwfscSurvey/

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issues

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align column headers with SS3/r4ss and/or within the package?

#164 iantaylor-NOAA opened 6 days ago
7
Style code and document

#163 github-actions[bot] opened 3 weeks ago
0
Fix est_weight_length() and add biology plotting functions

#162 chantelwetzel-noaa closed 3 weeks ago
0
export stopifnotcolumn or use nwfscSurvey:::stopifnotcolumn?

#161 kellijohnson-NOAA closed 3 weeks ago
2
Create consistent messages from `pull_*()` functions

#160 kellijohnson-NOAA closed 3 weeks ago
6
Renaming of columns in `estimate_weight_length()` causes failure if they exist

#159 kellijohnson-NOAA closed 3 weeks ago
2
fix: correct the write.csv for unsexed formatted comps

#158 chantelwetzel-noaa closed 1 month ago
0
Style code and document

#157 github-actions[bot] closed 1 month ago
0
Allow users to retain non-standard tows when pulling data

#156 chantelwetzel-noaa closed 1 month ago
0
Style code and document

#155 github-actions[bot] closed 2 months ago
0
Create dataset for tests

#154 chantelwetzel-noaa opened 2 months ago
0
Evaluate how and when `codify_sex()` works

#153 chantelwetzel-noaa opened 2 months ago
0
Consider adding helper functions when creating composition data

#152 chantelwetzel-noaa opened 2 months ago
0
Combine `dir` and `printfolder` inputs

#151 chantelwetzel-noaa opened 2 months ago
0
Separate formatting of composition data from the expansion process

#150 chantelwetzel-noaa opened 2 months ago
0
Style code and document

#149 github-actions[bot] closed 2 months ago
0
The use of `@template` is outdated

#148 kellijohnson-NOAA opened 3 months ago
0
Fix biological data pull for Triennial and AFSC.Slope if no otoliths were collected

#147 chantelwetzel-noaa closed 2 months ago
3
Issue with pulling quillback bio data from the Triennial survey

#146 brianlangseth-NOAA closed 2 months ago
0
Add new functions to calculate expanded composition data and input sample sizes

#145 chantelwetzel-noaa closed 2 months ago
8
Fix the plot option within plot_bio_patterns() function

#144 brianlangseth-NOAA closed 3 months ago
0
Otolith ID for Triennial survey

#143 chantelwetzel-noaa closed 3 months ago
1
Error pulling biological data for AFSC.Slope survey

#142 chantelwetzel-noaa closed 3 months ago
0
Style code and document

#141 github-actions[bot] closed 3 months ago
0
Style code and document

#140 github-actions[bot] closed 4 months ago
0
Style code and document

#139 github-actions[bot] closed 4 months ago
2
replace update-docs with doc and style workflow

#138 k-doering-NOAA closed 4 months ago
1
Add R-CMD-check hourly

#137 kellijohnson-NOAA closed 4 months ago
1
Desgin based

#136 chantelwetzel-noaa closed 4 months ago
0
Update Roxygen documentation

#135 github-actions[bot] closed 4 months ago
0
Create new functions to calculate the design based index and plot the index by year and year-strata

#134 chantelwetzel-noaa closed 4 months ago
2
Error in JSON query from `PullCatch.fn()`

#133 seananderson closed 5 months ago
2
Add new function to calculate raw/unexpanded composition data

#132 chantelwetzel-noaa closed 6 months ago
5
Update Roxygen documentation

#131 github-actions[bot] closed 6 months ago
0
Update and improve function documentation

#130 chantelwetzel-noaa closed 6 months ago
0
Add functionality to pull sample type

#129 chantelwetzel-noaa closed 6 months ago
3
Update Roxygen documentation

#128 github-actions[bot] closed 6 months ago
0
get pull_spp() to work

#127 iantaylor-NOAA closed 7 months ago
1
Duplicated code for converting to hex

#126 kellijohnson-NOAA closed 7 months ago
1
Cannot specify `common_name` and `sci_name` in `pull_catch()`

#125 kellijohnson-NOAA closed 7 months ago
1
Update Roxygen documentation

#124 github-actions[bot] closed 8 months ago
0
Move to cli package for error messages

#123 chantelwetzel-noaa opened 1 year ago
0
Fix plot comps

#122 kellijohnson-NOAA closed 1 year ago
0
Stops printing message at end of SurveyLFs.fn if dir=NULL

#121 kellijohnson-NOAA closed 1 year ago
1
outName is blank in `Pull*.fn()`

#120 kellijohnson-NOAA closed 5 months ago
1
mismatch between bio and catch data in WCGBTS data

#119 iantaylor-NOAA closed 5 months ago
8
add survey name associated with samples in Canada

#118 iantaylor-NOAA closed 8 months ago
6
Documentation fixes & option to not rescale comps to sum to 100

#117 iantaylor-NOAA closed 1 year ago
0
fix(pull_catch): Allow a vector of common or latin

#116 kellijohnson-NOAA closed 7 months ago
16
add option to pull data from unsatisfactory tows

#115 iantaylor-NOAA closed 1 month ago
4