pfmc-assessments / nwfscSurvey

Tool to pull and process NWFSC West Coast groundfish survey data for use in PFMC groundfish stock assessments
http://pfmc-assessments.github.io/nwfscSurvey/
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estimate growth parameters consistently #57

Open kellijohnson-NOAA opened 2 years ago

kellijohnson-NOAA commented 2 years ago

Problem

There are many ways to estimate growth parameters and it is not consistent between nwfscSurvey and PacFIN.Utilities. Furthermore, parameter estimates are different depending on the parameterization.

I had originally started a new branch to do this, but it moved from the icebox to a broken down unplugged freezer. I plan on

Proposed solution

Implement many ways of estimating growth. Talk to @shcaba and @melissamonk-NOAA because they both do this independently of the packages. Maybe even @ChristineStawitz-NOAA.

chantelwetzel-noaa commented 1 year ago

An approach for estimating growth in terms of L0 has been created within the new est_growth function. This function works similar to the approach in the {PacFIN.Utilities} package where a predicted length along with a ranged of potential low and high values based on a pre-specified number of standard deviations. The est_growth function calls the same function as the {PacFIN.Utilities} package which is called fit_vbgrowth and is housed in the {nwfscSurvey} package.