pfmc-assessments / sa4ss

Generate a stock assessment document from Stock Synthesis output
https://pfmc-assessments.github.io/sa4ss/
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Figure 2 (Fuller et al. 2017) of fisheries connectivity #51

Open kellijohnson-NOAA opened 2 years ago

kellijohnson-NOAA commented 2 years ago

Idea

While reading Fuller et al. (2017) I thought that Figure 2 would be a great addition to our stock assessments. The figure highlights the sablefish fishery but I think that we could get the code to generate the figure from @emfuller and include more groundfish species for comparisons.

Proposed solution

Potential problems

Acknowledgements

Thank you to @emfuller et al. for making such a beautiful figure that inspired something in me, otherwise why would I propose more work and even longer documents for myself :laughing:.

emfuller commented 2 years ago

@kellijohnson-NOAA what a wonderful note to get! Nothing is better than hearing this might be actually useful visualization for stock assessments! I will take a shot at digging up my code - but I used the R package igraph. Lots of tweaking to set up the node locations - but what you need is a network, edge weights, node sizes and node names.

kellijohnson-NOAA commented 2 years ago

Awesome, thank you so much for taking the time to dig through your code, your efforts are much appreciated. In the mean time I will look into igraph.

jameals commented 2 years ago

hi!

i will respond via git later but fyi we are advancing and modernizing this work here: https://github.com/jameals/cciea_networks

networks were in this year's status report to the PFMC and will also reside on the CCIEA webpage

https://www.pcouncil.org/documents/2021/02/i-1-a-iea-team-report-1.pdf/

On Thu, Oct 7, 2021 at 1:12 PM Kelli Johnson @.***> wrote:

Awesome, thank you so much for taking the time to dig through your code, your efforts are much appreciated. In the mean time I will look into igraph.

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Jameal Samhouri [he/him] Conservation Biology Division Ecosystem Science Program Manager Northwest Fisheries Science Center National Marine Fisheries Service National Oceanic and Atmospheric Administration 2725 Montlake Blvd. E Seattle, WA 98112 USA Office Phone: 206-302-1740 (not checked during COVID) Cell Phone: 206-962-0984 jamealsamhouri.com