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Adding Transcripts in Advanced Oligo Enumerator Gives Enumeration Error 200 #3

Open chemist-ian opened 2 years ago

chemist-ian commented 2 years ago

Using an ensembl ID and trying to add a transcript gives a java.lang.NullPointerException.

Here are the logs:

May 18, 2022 1:29:51 PM org.pfred.rest.RestServiceCaller get INFO: GET: https://os.biogen.com/PFREDRestService/service/ScriptUtilities/appendToFile?FileName=sequence.fa&Text=%0A%3EENSMMUT00000056774.2%20cdna:pseudogene%0AATGCCCAGGGAAGACAGGGCGACCTGGAAGTCCAACTACTTCCTTAAGATCATCCAACTATTGGATGATTATCCGAAATGTTTCATCGTGGGAGCGGACAATGTGGGTTCCAAGCAGATGCAGCAGATCCGCATGTCCCTTCGAGGGAAGGCCGTGGTGCTGATGGGCAAGAACACCATGATGCGCAAGGCCATCCGAGGGCACCTGGAAAACAACCCAGCTCTGGAGAAACTGCTGCCTCATATCCGGGGGAATGTGGGCTTTGTGTTCACCAAGGAGGACCTCACTGAGATCAGGGACATGTTGCTGGCCAATAAGGTGCCAGCTGCTGCCCGTGCTGGTGCCATTGCTCCATGTGAAGTCACTGTGCCAGCCCAGAACACTGGACTCGGGCCCGAGAAGACCTCCTTTTTCCAGGCTTTAGGTATCACCACTAAAATCTCCAGGGGCACCATTGAAATCCTGAGTGATGTGCAGCTGATCAAGACTGGAGACAAAGTGGGAGCCAGCGAAGCCACGCTGCTGAACATGCTCAACATCTCCCCCTTCTCCTTTGGGCTGGTCATCCAGCAGGTGTTTGACAATGGCAGCATCTACAATCCTGAAGTGCTTGACATCACAGAGGAAACTCTGCATTCTCGCTTCCTAGAGGGTGTCCGCAATGTTGCCAGTGTCTGTCTGCAGATTGGCTACCCAACTGTTGCATCAGTACCCCATTCTATCATCAACGGGTACAAACGAGTCCTGGCCTTGTCTGTGGAGATGGATTACACCTTCCCACTTGCTGAAAAGGTCAAGGCCTTCTTGGCTGATCCATCTGCCTTTGTGGCTGCTGCCCCTGTGGCTGCTGCCACCACAGCTGCTCCTGCTGCTGCTGCTGCAGCCCCAGCTAAGGTTGAAGCCAAGGAAGAGTCGGAGGAGTCGGACGAGGATATGGGATTTGGTCTCTTTGACTAA&RunDirectory=41e1f9e5-52bc-492e-a46e-558e14f74507 Response Code: 200 May 18, 2022 1:29:54 PM org.pfred.rest.RestServiceCaller get INFO: GET: https://os.biogen.com/PFREDRestService/service/ScriptUtilities/enumerate_first?RunDirectory=41e1f9e5-52bc-492e-a46e-558e14f74507&SecondaryTranscriptIDs=ENSMUST00000090858,ENSMUST00000040915,ENST00000677392,ENST00000678088,ENST00000676508,ENST00000260970,ENST00000678695,ENST00000677750,ENST00000678721,ENST00000676756,ENST00000679107,ENST00000678499,ENSMMUT00000056774.2%20cdna:pseudogene&PrimaryTranscriptID=ENST00000678695&oligoLen=19 Response Code: 400 May 18, 2022 1:29:59 PM org.pfred.rest.RestServiceCaller get INFO: GET: https://os.biogen.com/PFREDRestService/service/ScriptUtilities/enumerate_second?RunDirectory=41e1f9e5-52bc-492e-a46e-558e14f74507 Response Code: 200 java.lang.NullPointerException

chemist-ian commented 2 years ago

@TianhongZhang @alfredyewang is there any solution to this problem?

susansmiths commented 1 year ago

@chemist-ian @TianhongZhang @alfredyewang did you find a solution?