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pgfoster / p4-phylogenetics

A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution
GNU General Public License v2.0
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tree.compoTestUsingSimulations(verbose=1) - SOLVED #11

Closed cymon closed 7 years ago

cymon commented 7 years ago

Part 0: Chi-square = 1132.311982, (dof=1558) P = 1.000000 Composition homogeneity test using simulations. P-values are shown.

                     Part Num       0      
                    Part Name      all     
                All Sequences   Traceback (most recent call last):

File "/home/cymon/bin/calculateIfCompostionHomogeneous.py", line 93, in main(args.paths, args.input_tree) File "/home/cymon/bin/calculateIfCompostionHomogeneous.py", line 56, in main do_one_partition(align, align_data, input_tree) File "/home/cymon/bin/calculateIfCompostionHomogeneous.py", line 41, in do_one_partition tree.compoTestUsingSimulations(nSims=1000, verbose=1) File "/usr/local/src/p4-phylogenetics.git.cymon/p4/tree_fit.py", line 1005, in compoTestUsingSimulations print(string.center('%6.4f' % partTaps[pNum], partWid), end=' ') TypeError: float argument required, not list

cymon commented 7 years ago

Sorry, not sure what was going on there - but an update to the latest github version cured it...