Bioinformatics Pipeline Standards and Review Process

pha4ge / pipeline-resources

Bioinformatics Pipeline and Visualization resources

https://pha4ge.org/bioinformatics-pipelines-and-visualization/

Apache License 2.0

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Bioinformatics Pipeline Standards and Review Process #20

Open kevinlibuit opened 2 years ago

kevinlibuit commented 2 years ago

Creation of standards by which bioinformatics resources can be systematically assessed plus a review process defining the assessment criteria and procedure

kevinlibuit commented 2 years ago

Useful resources to get us started:

Ten recommendations for creating useable bioinformatics command line software
Existing Workflow Systems
Workflow Execution Service (WES) API
GA4GE Tool Execution Challenge
bio.tools tool registry

kevinlibuit commented 2 years ago

More useful resources:

JOSS review checklist
How to write bioinformatic software no one will use
Global coalition regulatory science research

kapsakcj commented 2 years ago

https://www.slideshare.net/torstenseemann/how-to-write-bioinformatics-software-no-one-will-use

https://www.nature.com/articles/s41591-020-0935-z

^ "Ten recommendations for supporting open pathogen genomic analysis in public health" - Allison Black, Duncan R. MacCannell, Thomas R. Sibley & Trevor Bedford