pha4ge / pipeline-resources

Bioinformatics Pipeline and Visualization resources
https://pha4ge.org/bioinformatics-pipelines-and-visualization/
Apache License 2.0
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HIV Guidance Doc #36

Closed frankambrosio3 closed 3 months ago

frankambrosio3 commented 4 months ago

:pushpin: Explain the Request

There exists a need to encourage burgeoning bioinformaticians to pursue the challenges presented by HIV genomics. Here, we present a guidance document designed to help public health scientists interested in performing genomic characterization, antiviral resistance detection, phylogenetic tree construction, and genomic epidemiological investigation involving HIV Next Generation Sequencing data.

:books: Context

There exists a need to encourage burgeoning bioinformaticians to pursue the challenges presented by HIV genomics.

:chart_with_upwards_trend: Desired Contribution

We request a guidance document designed to help public health scientists interested in performing genomic characterization, antiviral resistance detection, phylogenetic tree construction, and genomic epidemiological investigation involving HIV Next Generation Sequencing data.

:information_source: Additional Information

Please include descriptions of common open-source bioinformatics software as well as case study examples.