phac-nml-phrsd / ern

R library to estimate the Effective Reproduction Number (Rt)
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implement repeat random sampling of GI from family when daily reports from aggregates #79

Open papsti opened 1 year ago

papsti commented 1 year ago

this may be slow as it involves re-running the JAGS model several times. the current approach is just to do one run with the mean GI. a middle-ground between these two approaches would be to sample the mean GI, some lower/upper bounds (using parameters taken from some quantiles of the parameter distributions). this would only involve three runs of the JAGS model.

papsti commented 1 year ago

implement this as an option---if one wants to resample they can, but by default just use mean