phac-nml / CryptoGenotyper

CryptoGenotyper is a tool that allows for subtyping the parasite, Cryptosporidium
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Allow users to control species prediction sensitivity via adjustment of min thresholds #3

Open kbessonov1984 opened 3 years ago

kbessonov1984 commented 3 years ago

Problem: Occasionally users provide small amplicons results in lack of any species prediction due to failure to meet default thresholds. Solution: Allow users to adjust default thresholds such as minimum bitscore and min per base phred quality, as well as, other parameters. This will increase flexibility and better fit customer user cases and usage scenarios.