#13, #14: Quality Checking Module & Technician's Output

phac-nml / biohansel

Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes

Apache License 2.0

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#13, #14: Quality Checking Module & Technician's Output #17

Closed mgopez closed 6 years ago

mgopez commented 6 years ago

Created new simple output file for technicians.
Added quality checking for samples (min tiles, is samples mixed)

mgopez commented 6 years ago

@peterk87, now Genevieve's QC module is implemented. Please let me know if you find anything I can refactor / change.

mgopez commented 6 years ago

@peterk87 I added in the new params for the QC module. ~~They probably aren't the best names~~ Words aren't coming to me right now, so if you have any suggestions let me know so I can change them.

mgopez commented 6 years ago

I added some tests to verify that the QC functions are working as expected. Please let me know if there's anything else you want me to change for this pr @peterk87.