Closed peterk87 closed 6 years ago
Probably related to the issue described here:
https://serverfault.com/questions/570024/zcat-gzcat-works-in-linux-not-on-osx-general-linux-osx-compatibility
Changing the following line https://github.com/phac-nml/bio_hansel/blob/master/bio_hansel/parsers.py#L94
from
with os.popen('zcat {}'.format(filepath)) as f:
to
with os.popen('zcat < {}'.format(filepath)) as f:
May solve this issue, but testing on OSX is required.
Probably related to the issue described here:
https://serverfault.com/questions/570024/zcat-gzcat-works-in-linux-not-on-osx-general-linux-osx-compatibility
Changing the following line https://github.com/phac-nml/bio_hansel/blob/master/bio_hansel/parsers.py#L94
from
to
May solve this issue, but testing on OSX is required.