@peterk87 current version of biohansel does not work on fasta/q files with lower case as comparisons to ref tiles fail. In current patch all input sequences are converter to upper case on the fly without modification of original input files. Also added unit tests as requested to test fasta contigs functionality as previous tests only focus on fastq inputs.
@peterk87 current version of biohansel does not work on fasta/q files with lower case as comparisons to ref tiles fail. In current patch all input sequences are converter to upper case on the fly without modification of original input files. Also added unit tests as requested to test fasta contigs functionality as previous tests only focus on fastq inputs.