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phac-nml / biohansel

Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes
Apache License 2.0
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update enteritidis scheme and typhimurium scheme added #92

Closed DarianHole closed 5 years ago

DarianHole commented 5 years ago

Added typhimurium scheme with 430 k-mers and a pytest for it to check

Update to enteritidis scheme adding 1 k-mer and changing some of the other ones.