phac-nml / irida-sistr-results

Compile results generated from SISTR within IRIDA
Apache License 2.0
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Add reportable serovars #12

Closed apetkau closed 5 years ago

apetkau commented 5 years ago

Includes an additional column to the report Reportable Serovar Status used to indicate serovars that are considered as reportable by SISTR (based on information in a lookup table).

This can be disabled with --exclude-reportable-status. A custom list of reportable serovars can be specified with --reportable-serovars-file.

Fixes #11