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phac-nml / mob-suite

MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
Apache License 2.0
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Error for mob_typer: No BLASTN results to parse from file #139

Closed avonm closed 1 year ago

avonm commented 1 year ago

Hi,

I get an error when running mob_typer. I do get output files that look ok. Saw a closed issue about this but it was saying it was fixed in version 3.1.4 but that's the version I run. Should I be worried about this error?

Version $ mob_typer --version mob_typer 3.1.4 Error: oot INFO: Blasting replicon sequences /home/mentzerv/miniconda3/envs/mob-suite-new/lib/python3.8/site-packages/mob_suite/databases/rep.dna.fas against /tmp/tmp5xc8bgye/fixed.input.fasta [in /home/mentzerv/miniconda3/envs/mob-suite-new/lib/python3.8/site-packages/mob_suite/utils.py:1150] 2023-06-03 22:11:02,225 root INFO: Filtering replicon blast results /tmp/tmp5xc8bgye/replicon_blast_results.txt [in /home/mentzerv/miniconda3/envs/mob-suite-new/lib/python3.8/site-packages/mob_suite/utils.py:1155] 2023-06-03 22:11:02,225 root WARNING: No BLASTN results to parse from file /tmp/tmp5xc8bgye/replicon_blast_results.txt [in /home/mentzerv/miniconda3/envs/mob-suite-new/lib/python3.8/site-packages/mob_suite/blast/__init__.py:181] 2023-06-03 22:11:02,228 root INFO: Blasting relaxase sequences /home/mentzerv/miniconda3/envs/mob-suite-new/lib/python3.8/site-packages/mob_suite/databases/mob.proteins.faa against /tmp/tmp5xc8bgye/fixed.input.fasta [in /home/mentzerv/miniconda3/envs/mob-suite-new/lib/python3.8/site-packages/mob_suite/utils.py:

jrober84 commented 1 year ago

These are listed as Info and Warning, they are not errors, but are flagging things that may be of interest from a logging perspective.