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phac-nml / mob-suite

MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
Apache License 2.0
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Error on ETE3 #76

Closed happykhan closed 3 years ago

happykhan commented 4 years ago

Hi .

I keep running into this issue with

2020-11-25 10:50:34,556 root ERROR: Exiting due to lock file not removed: /mob-suite/venv/lib/python3.7/site-packages/mob_suite-3.0.0-py3.7.egg/mob_suite/databases/ETE3_DB.lock [in /mob-suite/venv/lib/python3.7/site-packages/mob_suite-3.0.0-py3.7.egg/mob_suite/mob_recon.py:1007] `

not sure how to proceed. I am trying to use a database directory from else where, maybe its looking in its default location?

mob_recon -o mob_bc01 -i plas_bc01_3.fasta -d data/ -f

happykhan commented 4 years ago

Yeah. I rerun with mob_init being able to install the database where it wants.

and then ran mob_recon -o mob_bc01 -i plas_bc01_3.fasta -f [not specifying the db]

and it went through fine.

jrober84 commented 3 years ago

OK great, I will close this for now but if the issue occurs again please re-open