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phac-nml / mob-suite

MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
Apache License 2.0
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Slow running #96

Closed zhichusun closed 2 years ago

zhichusun commented 2 years ago

When I run a large amount of data, the program runs very slowly, and the number of threads does not change. What should I do? Can anyone help me? Thank you very much.code show as below mob_typer --multi --infile /root/ranseti.fasta --out_file ransetiresults.txt --num_threads 4

jrober84 commented 2 years ago

There was a hard limit of n=1 thread placed on some processes due to issues with tblastn with higher thread counts. This restriction has been removed and the new pending release will use all threads specified