phac-nml / nf-pipelines

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MLST JSON allele format #4

Open apetkau opened 4 months ago

apetkau commented 4 months ago

Purpose

This describes the MLST alleles format used for storing (cg/wg)MLST alleles.

Example

{
  "analysis": {
    "sample": "SAMPLE_NAME",
    "scheme": {"name": "SCHEME_NAME", "version": "SCHEME_VERSION"},
    "date": "DATE",
    "software": {
      "name": "locidex",
      "version": "0.1.0",
      "params": {...}
    },
  },
  "data": {
    "locus_1": [{"allele": "ALLELE_ID", "quality": {...}}],
    "locus_2": [{"allele": "ALLELE_ID", "quality": {...}}]
  }
}