Update DRM database

[mbyott]

Hi, the current database is 6 years out of date, where can I get a more up to date file?

[ammaraziz]

+1.

@mbyott Would you like to work together to update mutation_db.tsv ?

https://hivdb.stanford.edu/ would be the place to look for data.

Some links:

• https://hivdb.stanford.edu/project/ivseldb/
• https://cms.hivdb.org/prod/downloads/asi/HIVDB_9.5.0.xml <- continually updated, could be scraped but unsure if it contains the data we need.

For individual drugs:

• https://hivdb.stanford.edu/dr-summary/resistance-notes/PI/
• https://cms.hivdb.org/prod/downloads/resistance-mutation-handout/resistance-mutation-handout.pdf

[ammaraziz]

I found a bunch better resource at hivfacts github page:

https://github.com/hivdb/hivfacts/blob/main/data/

See the different sdrms_*.csv files (they're also in json and yml format which is nice). Unfortunately they lack the comments which is very helpful. But it's in a very easy to modify format.

Edit: I found the last piece of the puzzle, this file contains comments: https://github.com/hivdb/hivfacts/blob/f7409d68edaeaade1c6b99dd7ebd5e3500c96a4a/data/conditional-comments_hiv1.csv