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phac-nml
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rebar
REcombination BARcode detector.
https://phac-nml.github.io/rebar/
Apache License 2.0
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cli: make phylogeny a new sub-command
#45
ktmeaton
opened
9 months ago
0
draft: v0.3.0
#44
ktmeaton
opened
9 months ago
0
dependency: change bio crate to noodles
#43
ktmeaton
opened
9 months ago
0
v0.2.1
#42
ktmeaton
closed
9 months ago
0
phylogeny: get_common_ancestors performance
#41
ktmeaton
closed
9 months ago
0
phylogeny: add recombination flag to get_descendants and get_ancestors
#40
ktmeaton
opened
9 months ago
0
parsimony: change coordinates from vec to slice
#39
ktmeaton
closed
9 months ago
0
ci: restrict artifact uploads in test and nightly
#38
ktmeaton
closed
9 months ago
0
plot: fix legend overflow
#37
ktmeaton
closed
9 months ago
0
plot: fix legend overflow
#36
ktmeaton
closed
9 months ago
0
draft: v0.2.1
#35
ktmeaton
closed
9 months ago
1
docs: update conda install
#34
ktmeaton
closed
9 months ago
1
recombination: search implement new get_ancestors get_descendants
#33
ktmeaton
opened
9 months ago
0
validate: improve parent-child check
#32
ktmeaton
opened
9 months ago
0
run: fix order of parents and knockout parsing
#31
ktmeaton
opened
9 months ago
0
benchmark: compilation flags for flamegraph
#30
ktmeaton
opened
9 months ago
0
ci: too many large artifacts
#29
ktmeaton
closed
9 months ago
0
phylogeny: improve get_common_ancestor efficiency
#28
ktmeaton
closed
9 months ago
0
plot: fix legend overflow
#27
ktmeaton
closed
9 months ago
0
export: linelist operator on single result not vec
#26
ktmeaton
opened
9 months ago
0
recombination: remove struct param Sequence
#25
ktmeaton
opened
9 months ago
0
dependency: change from bio crate to noodles
#24
ktmeaton
opened
9 months ago
0
parsimony: change coordinates from vec to slice
#23
ktmeaton
closed
9 months ago
0
Add recombinant to plot
#22
ktmeaton
opened
9 months ago
0
Document handling of IUPAC amiguity
#21
ktmeaton
opened
9 months ago
0
How does rebar handle IUPAC ambiguous characters?
#20
ammaraziz
opened
9 months ago
4
plot: combine different breakpoints in one plot
#19
ktmeaton
opened
9 months ago
0
Speed regression
#18
ktmeaton
opened
9 months ago
2
Algorithm Deep Dive: XJ
#17
ktmeaton
opened
9 months ago
0
Algorithm Deep Dive: XD
#16
ktmeaton
opened
9 months ago
2
Improve documentation about input alignment
#15
ktmeaton
opened
10 months ago
1
Consider genome VCF instead of barcodes table.
#14
ktmeaton
opened
10 months ago
0
input: stream alignment and show progress bar
#13
ktmeaton
opened
10 months ago
1
explore: Find unknown recombinants in dataset
#12
ktmeaton
opened
10 months ago
0
Documentation for container install (docker, singularity, conda)
#11
ktmeaton
closed
10 months ago
0
install: conda
#10
ktmeaton
closed
9 months ago
1
Docker and Singularity
#9
ktmeaton
closed
10 months ago
1
Cross-Platform Fonts
#8
ktmeaton
closed
10 months ago
1
Could not load font from file path: "/usr/share/fonts/truetype/dejavu/DejaVuSans.ttf"
#7
ktmeaton
closed
10 months ago
3
libssl.so.3: cannot open shared object file
#6
ktmeaton
closed
10 months ago
5
Rustify
#5
ktmeaton
closed
10 months ago
0
Rustify
#4
ktmeaton
closed
10 months ago
1
Error !!
#3
wtchoga
opened
1 year ago
2
XV misclassified as XJ
#2
ktmeaton
closed
10 months ago
7
Efficiency improvements
#1
ktmeaton
opened
1 year ago
4