How to build MASH database from a RefSeq files

phac-nml / refseq_masher

Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database

Apache License 2.0

39 stars 4 forks source link

How to build MASH database from a RefSeq files #6

Open Mor-Rubinsteinn opened 1 year ago

Mor-Rubinsteinn commented 1 year ago

Dear MASH contributor, I have downloaded the bacterial RefSeq sequences as a set of 1752 .fna.gz files. How do I turn it into a MASH database to search against? Best regards, Mor rubinstein, National Public Health Laboratory, Tel Aviv