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phac-nml / staramr

Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.
Apache License 2.0
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How to update to version 0.6.5 using conda? #109

Closed SK-N-BE closed 2 years ago

SK-N-BE commented 5 years ago

I used conda to install staramr (current version 0.5.1). Using conda, it seems only possible to install version 0.5.1. : https://anaconda.org/bioconda/staramr How may I get the newest version? Do I have to install it manually or by using pip?

SK-N-BE commented 5 years ago

using conda update staramrresulted in updating the 0.5.1 version to 0.6.1 so that the MLST is now available. However, why does conda not update to version 0.6.5?

Takadonet commented 5 years ago

We have not made a version 0.6.5 and planning to release v 0.7.0 which is currently in progress.

For why version 0.6.1 is not available is little strange since when I do a conda search staramr it appears. On site itself it shows that noarch installation is at v0.6.1 but linux-64 and osx-64 is still at v0.5.1. Last update of the bioconda recipe was done by the bioconda bot . We will take a look to see what it happening.

SK-N-BE commented 5 years ago

Thank you for your comment! Yes, when I removed staramr and re-installed it using conda, the 0.5.1 version was installed. However, as described above, updating staramr following installation, resulted in updating version 0.5.1 to Version 0.6.1

quocviet0908 commented 4 years ago

Hi there. I'm trying to update staramr tu 0.6.1 from both outside and inside the staramr environment but still no luck so far. Could you please help me with this issue?

Takadonet commented 4 years ago

There is an issue that we are trying to address where if you ask for latest version to be installed it with following command conda install staramr, it will install v0.5.1 . Believe the reason is that we switch to noarch build but previously did arch specific in the past. V0.5.1 was the last version where we did specific arch build but moved to noarch since then. Hope that we can deprecated arch specific builds in the future.

If you wish to install the latest verison, you have to indicate the version as seen below. conda install staramr==0.7.1

quocviet0908 commented 4 years ago

Thanks very much. I have managed to install the 0.7.1 with your guidance.

apetkau commented 2 years ago

Running conda install staramr for me right now installs 0.7.2 (latest version) so I'm going to close this issue.