phac-nml / staramr

Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.
Apache License 2.0
111 stars 25 forks source link

Doc/installation #117

Closed apetkau closed 4 years ago

apetkau commented 4 years ago

Fixes up README.md to specify that you should run conda install staramr==0.7.1 (instead of just installing default, which will install an older version of staramr).

Also fixed tests so that they will properly work (uses pandas 0.25.3 instead of 1.0+). The proper solution would be to update the dependencies in setup.py, but I didn't want to then have to make a new release.