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phac-nml / staramr

Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.
Apache License 2.0
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PlasmidFinder database #120

Closed ireneortega closed 4 years ago

ireneortega commented 4 years ago

Staramr manual says "By default, both databases are used" for --plasmidfinder-database-type. How can I select both databases at the same time? I mean I want staramr to look for in _grampositive and enterobacteriaceae databases, not just one.

Thanks.

apetkau commented 4 years ago

Using both databases is the default behavior. So there's no need to pass anything on the command-line to select both of them.

ireneortega commented 4 years ago

All right, I understood. Now I got it! Thanks @apetkau