search

phac-nml / staramr

Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.
Apache License 2.0
120 stars 26 forks source link

Genome length error #140

Closed XtineLiu closed 2 years ago

XtineLiu commented 2 years ago

How can I change the settings so that I don't get error "Genome length is not within the acceptable length range [4000000,6000000]". Because my input fasta of genomes fall outside the range. Thx

apetkau commented 2 years ago

Hello. You can use --genome-size-lower-bound and --genome-size-upper-bound.

XtineLiu commented 2 years ago

It worked! I did

staramr search -o out *.fasta --genome-size-lower-bound 1000000 --genome-size-upper-bound 9000000

Thx