phac-nml / staramr

Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.
Apache License 2.0
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Example of pointfinder check #153

Closed pimarin closed 2 years ago

pimarin commented 2 years ago

This is my code to check the pointfinder database before analysis, It read all fasta files, mutations lists and try to modify positions. It miss the control of indel and also to check where is the start and end of a cds to split promoter and gene