Add support for additional PointFinder organisms

phac-nml / staramr

Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

Apache License 2.0

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Add support for additional PointFinder organisms #17

Closed apetkau closed 2 years ago

apetkau commented 6 years ago

Only salmonella is supported from the PointFinder database. Add support for all other organisms - https://bitbucket.org/genomicepidemiology/pointfinder_db/src

[x] campylobacter
[ ] e.coli
[ ] gonorrhoeae
[ ] tuberculosis
[x] enterococcus faecalis
[x] enterococcus faecium
[ ] malaria
[ ] M. tuberculosis
[ ] Staphylococcus aureus

pimarin commented 2 years ago

Hello,

I'm interested to integrate staramr into a national project for antimicrobial research. We are developing a complete workflow for research and clinical use. If I can help to develop the tool to be more integrative in term of pointfinder database.