Closed emarinier closed 1 year ago
Can you merge in the latest development
to fix merge conflicts?
Merge conflict should be resolved now.
Good catch, as always!
I think the issue was the complex mutation logic always assumed there would be existing results to extend, but sometimes there's no results. I added some logic to catch this.
Adds the ability for starAMR to handle "complex" point mutations. That is, mutations where several individual point mutations are simultaneously required to confer a phenotype.
The solution has been created for Enterococcus faecium, but the framework should allow other similar mutations to be added to the "complex_mutations.tsv" file and handled in the same way.